Hannah Trivett is a Research Fellow in Prof Lindsay Hall’s research group in the Department of Microbes, Infection and Microbiomes, where she studies how long-read metagenomic sequencing can be used to understand how microbes within the gastrointestinal ecosystem contribute to health and disease. Most recently, I explored this in patients with advanced chronic liver disease … Continue reading “Leveraging BlueBEAR to study the gut microbiome in health and disease”
Tag: bioinformatics
SeqProFT: Predict Protein Functions Using Less Computing Power
In this case study, we hear from Shuo Zhang, a PhD student in Computer Science, who is working on predicting protein properties using sequence information. Our work, SeqProFT, is a smart new way to predict protein properties using sequence information alone. Using BlueBEAR GPU resources, we trained and evaluated SeqProFT across a wide range of … Continue reading “SeqProFT: Predict Protein Functions Using Less Computing Power”
AlphaFold protein structure prediction to study DNA replication
In this case study, we hear from Paolo Passaretti, a postdoc in Cancer and Genomic Sciences, who is investigating how cells copy and protect their genomes during DNA replication. I am a postdoctoral researcher in Prof Aga Gambus’ Laboratory, in the Department of Cancer and Genomic Sciences, where we study how cells copy and protect … Continue reading “AlphaFold protein structure prediction to study DNA replication”
BEAR helps delve into the infant gut and malnutrition
In this case study we talk to Leon, a PhD student in the Department of Microbes, Infection and Microbiomes, who is using bioinformatics of microbes that encompass the human gut microbiome. The human gut is inhabited by trillions of microbial cells and most of those cells have very important roles in human health. My work … Continue reading “BEAR helps delve into the infant gut and malnutrition”
Using BEAR to peel back the layers on potato genetics
In this case study we talk to Jack, a PhD student in Biosciences, who is using bioinformatics to understand plant genetics. I am a PhD student working in plant sciences supervised by Dr Lindsey Compton. My research focuses on using bioinformatics to understand plant genetics. Canopy architecture traits, like height and area, impact photosynthesis, drought … Continue reading “Using BEAR to peel back the layers on potato genetics”