This case study highlights the ongoing collaboration between the Research Software Group, Professor Dylan Owen, and Dr Sandeep Shirgill in the development of Nano-org. Nano-org has recently been published in Nature Communications. Nano-org uses ultra-precise coordinate data to represent the nanoscale distributions of individual proteins within cells. The unique functionality provided by Nano-org supports a … Continue reading “SMLM Data Exploration with Nano-org and BlueBEAR”
Tag: SuperComputing
Bayesian Modelling of Rising Decision Thresholds in DDMs using BlueBEAR
In this case study we hear from Sophie Wetz, a Masters student in Psychology, who has been using BlueBEAR to investigate whether a dynamic, rising boundary improved the fit of the full Drift Diffusion Model (DDM) to Random Dot Kinematogram (RDK) task data. I’m a Master’s student on the Computational Neuroscience stream in the School … Continue reading “Bayesian Modelling of Rising Decision Thresholds in DDMs using BlueBEAR”
Atomic Simulation to Build Better Batteries
In this case study we hear from Oskar Soulas, a PhD student in Chemistry, who has been using BlueBEAR to investigate lithium–sulphur–nitrogen solid electrolytes for next-generation battery technologies. I am a second year PhD student in the Scanlon Materials Theory Group (SMTG) based at the University of Birmingham. The group uses powerful computational tools to understand … Continue reading “Atomic Simulation to Build Better Batteries”
Bio-inspired FSI and HPC-driven aerodynamic optimisation
In this case study we hear from Hibah Saddal, a PhD student in Aerospace Engineering, who is using BlueBEAR to optimise aerodynamic performance. At the 14th BEAR Conference 2025, I had the opportunity to present my research carried out with my PhD advisor, Dr Chandan Bose, on bio-inspired fluid-structure interaction (FSI) problems, where we leveraged … Continue reading “Bio-inspired FSI and HPC-driven aerodynamic optimisation”
BEAR helps delve into the infant gut and malnutrition
In this case study we talk to Leon, a PhD student in the Department of Microbes, Infection and Microbiomes, who is using bioinformatics of microbes that encompass the human gut microbiome. The human gut is inhabited by trillions of microbial cells and most of those cells have very important roles in human health. My work … Continue reading “BEAR helps delve into the infant gut and malnutrition”
Using BEAR to peel back the layers on potato genetics
In this case study we talk to Jack, a PhD student in Biosciences, who is using bioinformatics to understand plant genetics. I am a PhD student working in plant sciences supervised by Dr Lindsey Compton. My research focuses on using bioinformatics to understand plant genetics. Canopy architecture traits, like height and area, impact photosynthesis, drought … Continue reading “Using BEAR to peel back the layers on potato genetics”
Do restaurants care about consumers’ ratings?
In this case study we talk to Zhuangchen Wu, a final year PhD student in Economics, he is also the winner of the best presentation at the BEAR Conference 2025. Zhuangchen is investigating customer anger and consumer ratings. Consumer anger or fair pricing theory (Rotemberg 2005, 2011) proposes that firms have stable prices because they … Continue reading “Do restaurants care about consumers’ ratings?”
How I used BEAR to understand investor behaviour in FinTech markets
In this case study we talk to Mohammad B M A J Aldoub, a PhD student in Economics, who is investigating how investors react to negative shocks in peer-to-peer (P2P) lending platforms. My research examines how investors react to negative shocks in peer-to-peer (P2P) lending platforms, with a particular focus on belief dispersion during uncertain times. P2P lending refers … Continue reading “How I used BEAR to understand investor behaviour in FinTech markets”
Reflections from the BEAR Conference 2025
The 14th annual BEAR Conference, a vibrant event organised by postgraduates for postgraduates, took place on 22 May 2025 at the Alan Walters Building—and what a fantastic day it was! With 55 attendees, the conference was packed with insightful talks, lively discussions, and a strong sense of community. Dietmar Heinke, Chair of the BEAR User … Continue reading “Reflections from the BEAR Conference 2025”
Modelling defects in inorganic phosphor crystals
In this case study we talk to Maryia Shymanovich, a PhD student in Chemistry, whose project focuses on the computational analysis of the defects in inorganic phosphor materials for solid-state lighting applications. I am a second-year PhD student in Professor David Scanlon’s (School of Chemistry) group, and my research project focuses on the computational analysis of … Continue reading “Modelling defects in inorganic phosphor crystals”